Removed an error message

carpentries-incubator · Oct 5, 2021 · a4b3af0 · a4b3af0
1 parent a0cb6f4
commit a4b3af0
Showing 1 changed file with 5 additions and 19 deletions.
diff --git a/code/07_functional-connectivity-analysis_solutions.ipynb b/code/07_functional-connectivity-analysis_solutions.ipynb
@@ -78,7 +78,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 6,
+   "execution_count": null,
    "metadata": {},
    "outputs": [],
    "source": [
@@ -91,7 +91,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 7,
+   "execution_count": null,
    "metadata": {},
    "outputs": [],
    "source": [
@@ -102,23 +102,9 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 8,
-   "metadata": {},
-   "outputs": [
-    {
-     "ename": "ValueError",
-     "evalue": "BIDS root does not exist: /Users/swalkow2/Documents/GitHub/SDC-BIDS-fMRI/data/ds000030/derivatives/fmriprep",
-     "output_type": "error",
-     "traceback": [
-      "\u001b[0;31m---------------------------------------------------------------------------\u001b[0m",
-      "\u001b[0;31mValueError\u001b[0m                                Traceback (most recent call last)",
-      "\u001b[0;32m/var/folders/02/bsg_wyl53q1bq10qyh56b_q40000gp/T/ipykernel_2951/865981971.py\u001b[0m in \u001b[0;36m<module>\u001b[0;34m\u001b[0m\n\u001b[1;32m      1\u001b[0m \u001b[0;31m#Use PyBIDS to parse BIDS data structure\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0;32m----> 2\u001b[0;31m \u001b[0mlayout\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0mBIDSLayout\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mfmriprep_dir\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mvalidate\u001b[0m\u001b[0;34m=\u001b[0m\u001b[0;32mFalse\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m",
-      "\u001b[0;32m~/Documents/GitHub/SDC-BIDS-fMRI/CDS-BIDS-fMRI/lib/python3.9/site-packages/bids/layout/layout.py\u001b[0m in \u001b[0;36m__init__\u001b[0;34m(self, root, validate, absolute_paths, derivatives, config, sources, ignore, force_index, config_filename, regex_search, database_path, database_file, reset_database, index_metadata)\u001b[0m\n\u001b[1;32m    254\u001b[0m \u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m    255\u001b[0m         \u001b[0;31m# Do basic BIDS validation on root directory\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0;32m--> 256\u001b[0;31m         \u001b[0mself\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0m_validate_root\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m\u001b[1;32m    257\u001b[0m \u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m    258\u001b[0m         \u001b[0;32mif\u001b[0m \u001b[0mignore\u001b[0m \u001b[0;32mis\u001b[0m \u001b[0;32mNone\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n",
-      "\u001b[0;32m~/Documents/GitHub/SDC-BIDS-fMRI/CDS-BIDS-fMRI/lib/python3.9/site-packages/bids/layout/layout.py\u001b[0m in \u001b[0;36m_validate_root\u001b[0;34m(self)\u001b[0m\n\u001b[1;32m    484\u001b[0m \u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m    485\u001b[0m         \u001b[0;32mif\u001b[0m \u001b[0;32mnot\u001b[0m \u001b[0mos\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mpath\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mexists\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mself\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mroot\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0;32m--> 486\u001b[0;31m             \u001b[0;32mraise\u001b[0m \u001b[0mValueError\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0;34m\"BIDS root does not exist: %s\"\u001b[0m \u001b[0;34m%\u001b[0m \u001b[0mself\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mroot\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m\u001b[1;32m    487\u001b[0m \u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m    488\u001b[0m         \u001b[0mtarget\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0mos\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mpath\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mjoin\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mself\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mroot\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0;34m'dataset_description.json'\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n",
-      "\u001b[0;31mValueError\u001b[0m: BIDS root does not exist: /Users/swalkow2/Documents/GitHub/SDC-BIDS-fMRI/data/ds000030/derivatives/fmriprep"
-     ]
-    }
-   ],
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
    "source": [
     "#Use PyBIDS to parse BIDS data structure\n",
     "layout = BIDSLayout(fmriprep_dir, validate=False)"