ENH: Update Binder environment

README.md

@@ -92,7 +92,7 @@ To cite this lesson, please consult with [CITATION](CITATION)
 [slack_channel_status]: https://img.shields.io/badge/Slack_Channel-neuroimaging-E01563.svg
 [slack_channel_url]: https://swcarpentry.slack.com/messages/CCJBHKCHZ
 [binder_svg]: https://mybinder.org/badge_logo.svg
-[binder_url]: https://mybinder.org/v2/gh/carpentries-incubator/SDC-BIDS-dMRI/main
+[binder_url]: https://mybinder.org/v2/gh/carpentries-incubator/SDC-BIDS-dMRI/main?urlpath=lab/tree/code
 [episode01]: https://carpentries-incubator.github.io/SDC-BIDS-dMRI/introduction/index.html
 [episode02]: https://carpentries-incubator.github.io/SDC-BIDS-dMRI/preprocessing/index.html
 [episode03]: https://carpentries-incubator.github.io/SDC-BIDS-dMRI/local_orientation_reconstruction/index.html

binder/apt.txt

@@ -0,0 +1 @@
+tree

binder/environment.yml

@@ -0,0 +1,22 @@
+name: dc-dmri
+
+channels:
+  - default
+  - conda-forge
+
+dependencies:
+  - python=3.8.*
+  - pip
+  - git
+  - dipy=1.3.0
+  - fury=0.6.1
+  - matplotlib
+  - nibabel
+  - nilearn=0.7.0
+  - numpy
+  - osfclient
+  - pandas
+  - seaborn
+
+  - pip:
+      - pybids

binder/postBuild

@@ -0,0 +1,4 @@
+# download pre-processed dMRI data
+osf -p cmq8a fetch ds000221_subject/ds000221_sub-010006.zip data/ds000221_sub-010006.zip
+unzip data/ds000221_sub-010006.zip -d data
+rm data/ds000221_sub-010006.zip