Merge pull request #44 from gregcaporaso/201-dev

updates for 2.0.1 development cycle

ChangeLog.md

@@ -1,5 +1,10 @@
-# SourceTracker2 0.1.0
+# sourcetracker2 changelog
 
-  * Initial Release
-  * Re-implements the Gibbs sampler from the original SourceTracker (see README.md)
-  * Supports multple jobs through `--jobs`
+## 2.0.1-dev (changes since 2.0.1 go here)
+
+## 2.0.1
+
+  * Initial alpha release.
+  * Re-implements the Gibbs sampler from [@danknights's SourceTracker.](https://github.com/danknights/sourcetracker).
+  * [click](http://click.pocoo.org/)-based command line interface through the ``sourcetracker2`` command.
+  * Supports parallel execution using the `--jobs` parameter.

README.md

@@ -35,7 +35,7 @@ SourceTracker2 is Python 3 software. The easiest way to install it is using Anac
 To install SourceTracker 2 using Anaconda, run the following commands:
 
 ```bash
-conda create -n st2 python=3.5 numpy scipy h5py hdf5
+conda create -n st2 python=3.5 numpy scipy h5py hdf5 matplotlib
 source activate st2
 pip install sourcetracker
 ```
@@ -151,7 +151,7 @@ strategy**
 `sourcetracker2 gibbs -i otu_table.biom -m map.txt -o example4/ --burnin 100`
 
 **Calculate the proportion of each source in each sink, using a sink
-rarefaction depth of 2500**    
+rarefaction depth of 1500**    
 `sourcetracker2 gibbs -i otu_table.biom -m map.txt -o example5/ --sink_rarefaction_depth 2500`
 
 **Calculate the proportion of each source in each sink, using ipyparallel to run in parallel with 5 jobs**  

setup.py

@@ -9,7 +9,7 @@
 
 from setuptools import find_packages, setup
 
-__version__ = '2.0.1'
+__version__ = '2.0.1-dev'
 
 classes = """
     Development Status :: 1 - Planning

sourcetracker/__init__.py

@@ -7,5 +7,5 @@
 # The full license is in the file LICENSE, distributed with this software.
 # ----------------------------------------------------------------------------
 
-__version__ = '2.0.1'
+__version__ = '2.0.1-dev'
 _readme_url = "https://github.com/biota/sourcetracker2/blob/master/README.md"