Merge branch 'release/3.11.0'

cancerit · Sep 9, 2024 · 2d18b9a · 2d18b9a
2 parents 69bed51 + 8d57197
commit 2d18b9a
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Showing 4 changed files with 7 additions and 3 deletions.
diff --git a/CHANGES.md b/CHANGES.md
@@ -1,5 +1,9 @@
 # CHANGES
 
+## 3.11.0
+- Updated Dockerfile to use pcap-core 5.8.0 - htslib/samtools 1.20
+- Update 'Bio::DB::HTS' to version 3.0.1
+
 ## 3.10.0
 
 - Add commandline option for file containing exclude contigs

diff --git a/Dockerfile b/Dockerfile
@@ -1,4 +1,4 @@
-FROM quay.io/wtsicgp/pcap-core:5.6.1 as builder
+FROM quay.io/wtsicgp/pcap-core:5.8.1 as builder
 
 # hadolint ignore=DL3002
 USER  root

diff --git a/perl/Makefile.PL b/perl/Makefile.PL
@@ -48,7 +48,7 @@ WriteMakefile(
                      'Try::Tiny' => 0.19,
                      'File::Which' => 0.05,
                      'List::Util' => 1.38,
-                     'Bio::DB::HTS' => 1.11,
+                     'Bio::DB::HTS' => 3.01,
                      'List::MoreUtils' => 0.33,
                      'Test::Fatal' => 0.013,
                      'Devel::Cover' => 1.09,

diff --git a/perl/lib/Sanger/CGP/Pindel.pm b/perl/lib/Sanger/CGP/Pindel.pm
@@ -33,7 +33,7 @@ use strict;
 use Const::Fast qw(const);
 
 use base 'Exporter';
-our $VERSION = '3.10.0';
+our $VERSION = '3.11.0';
 our @EXPORT = qw($VERSION);
 
 1;