fix #19

cambiotraining · Dec 8, 2023 · 8ba6eac · 8ba6eac
1 parent 6f0abd1
commit 8ba6eac
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Showing 2 changed files with 5 additions and 2 deletions.
diff --git a/materials/07-bacqc.md b/materials/07-bacqc.md
@@ -161,6 +161,7 @@ Your first task is to run the `bacQC` pipeline on your data.  In the folder `scr
 nextflow run avantonder/bacQC \
   -r main \
   -profile singularity \
+  --max_memory '16.GB' --max_cpus 8 \
   --input samplesheet.csv \
   --outdir results/bacqc \
   --kraken2db databases/minikraken2_v1_8GB \

diff --git a/materials/32-command_line_amr.md b/materials/32-command_line_amr.md
@@ -68,7 +68,8 @@ mamba activate nextflow
 mkdir results/funcscan
 
 # run the pipeline
-nextflow run nf-core/funcscan -profile singularity \
+nextflow run nf-core/funcscan \
+  -profile singularity \
   --max_memory 16.GB --max_cpus 8 \
   --input SAMPLESHEET \
   --outdir OUTPUT_DIRECTORY \
@@ -109,7 +110,8 @@ The fixed script is:
 mkdir results/funcscan
 
 # run the pipeline
-nextflow run nf-core/funcscan -profile singularity \
+nextflow run nf-core/funcscan \
+  -profile singularity \
   --max_memory 16.GB --max_cpus 8 \
   --input samplesheet_funcscan.csv \
   --outdir results/funcscan \