Refactor: organize application as a package

.env.sample

@@ -1 +1,2 @@
+FLASK_APP=eligibility_server/app.py
 ELIGIBILITY_SERVER_SETTINGS=../config/sample.py

.github/workflows/run-tests.yml

@@ -27,6 +27,6 @@ jobs:
 
       - name: Test with pytest
         run: |
-          python setup.py
+          flask init-db
           coverage run -m pytest
           coverage report -m

.gitignore

@@ -5,3 +5,4 @@ __pycache__/
 .env
 config/*
 !config/sample.py
+eligibility_server.egg-info

Dockerfile

@@ -10,6 +10,10 @@ RUN pip install --no-cache-dir -r requirements.txt
 COPY bin/ bin/
 COPY eligibility_server/ eligibility_server/
 COPY *.py .
+COPY README.md .
+
+# install source as a package
+RUN pip install -e .
 
 # start app
 ENTRYPOINT ["/bin/bash"]

bin/init.sh

@@ -3,4 +3,4 @@ set -eux
 
 # run database migrations
 
-python setup.py
+flask init-db

docs/getting-started.md

@@ -65,8 +65,7 @@ Once you clone the repository locally, open it within VS Code, which will prompt
  2. Start the `eligibility-server` Flask app and database with `F5`
  3. Now you can run tests from the container.
 
-Starting the Dev Container will run `bin/init.sh`, which runs `setup.py` and starts the Flask app. The `setup.py` script creates the database and imports and saves users
-based on the configured settings.
+Starting the Dev Container will run `bin/init.sh`, which runs a command to initialize the database. More specifically, it creates the database and imports and saves users based on the configured settings.
 
 ## Run tests
 
@@ -80,16 +79,16 @@ The test suite runs against every pull request via a GitHub Action.
 
 In testing the database, you may need to teardown the database and restart a database from scratch.
 
-The teardown script removes all users and drops the database. To tear down the database, run:
+The command below will remove all users and drop the database:
 
 ```bash
-python teardown.py
+flask drop-db
 ```
 
 To set up the database with a new import file or other configuration variables, after making any new environment variable changes, run:
 
 ```bash
-python setup.py
+flask init-db
 ```
 
 ## Run and develop the Documentation

eligibility_server/app.py

@@ -5,11 +5,11 @@
 
 from flask import Flask, jsonify, make_response
 from flask_restful import Api
-from flask_sqlalchemy import SQLAlchemy
 from flask.logging import default_handler
 
-from .verify import Verify
-from .keypair import get_server_public_key
+from eligibility_server import db
+from eligibility_server.verify import Verify
+from eligibility_server.keypair import get_server_public_key
 
 app = Flask(__name__)
 app.config.from_object("eligibility_server.settings")
@@ -67,18 +67,7 @@ def internal_server_error(error):
 api = Api(app)
 api.add_resource(Verify, "/verify")
 
-db = SQLAlchemy(app)
-
-
-class User(db.Model):
-    id = db.Column(db.Integer, primary_key=True)
-    sub = db.Column(db.String, unique=True, nullable=False)
-    name = db.Column(db.String, unique=True, nullable=False)
-    types = db.Column(db.String, unique=False, nullable=False)
-
-    def __repr__(self):
-        return "<User %r>" % self.sub
-
+db.init_app(app)
 
 if __name__ == "__main__":
     app.run(host=app.config["HOST"], debug=app.config["DEBUG_MODE"], port="8000")  # nosec

eligibility_server/db/__init__.py

@@ -0,0 +1,17 @@
+import logging
+
+from flask_sqlalchemy import SQLAlchemy
+
+logger = logging.getLogger(__name__)
+
+
+db = SQLAlchemy()
+
+
+def init_app(app):
+    db.init_app(app)
+
+    from .setup import init_db_command, drop_db_command
+
+    app.cli.add_command(init_db_command)
+    app.cli.add_command(drop_db_command)

eligibility_server/db/models.py

@@ -0,0 +1,11 @@
+from eligibility_server.db import db
+
+
+class User(db.Model):
+    id = db.Column(db.Integer, primary_key=True)
+    sub = db.Column(db.String, unique=True, nullable=False)
+    name = db.Column(db.String, unique=True, nullable=False)
+    types = db.Column(db.String, unique=False, nullable=False)
+
+    def __repr__(self):
+        return "<User %r>" % self.sub

eligibility_server/db/setup.py

@@ -0,0 +1,95 @@
+import csv
+import json
+
+import click
+from flask import current_app
+from flask_sqlalchemy import inspect
+
+from eligibility_server.db.models import db, User
+
+
+@click.command("init-db")
+def init_db_command():
+    with current_app.app_context():
+        inspector = inspect(db.engine)
+
+        if inspector.get_table_names():
+            click.echo("Tables already exist.")
+            if User.query.count() == 0:
+                import_users()
+            else:
+                click.echo("User table already has data.")
+        else:
+            click.echo("Creating table...")
+            db.create_all()
+            click.echo("Table created.")
+
+            import_users()
+
+
+def import_users():
+    """
+    Imports user data to be added to database and saves user to database
+
+    Users can be imported from either a JSON file or CSV file, as configured
+    with settings. CSV files take extra setting configurations:
+    CSV_DELIMITER, CSV_NEWLINE, CSV_QUOTING, CSV_QUOTECHAR
+    """
+
+    file_path = current_app.config["IMPORT_FILE_PATH"]
+    click.echo(f"Importing users from {file_path}")
+
+    file_format = file_path.split(".")[-1]
+
+    if file_format == "json":
+        with open(file_path) as file:
+            data = json.load(file)["users"]
+            for user in data:
+                save_users(user, data[user][0], str(data[user][1]))
+    elif file_format == "csv":
+        with open(file_path, newline=current_app.config["CSV_NEWLINE"], encoding="utf-8") as file:
+            data = csv.reader(
+                file,
+                delimiter=current_app.config["CSV_DELIMITER"],
+                quoting=int(current_app.config["CSV_QUOTING"]),
+                quotechar=current_app.config["CSV_QUOTECHAR"],
+            )
+            for user in data:
+                save_users(user[0], user[1], user[2])
+    else:
+        click.echo(f"Warning: File format is not supported: {file_format}")
+
+    click.echo(f"Users added: {User.query.count()}")
+
+
+def save_users(sub: str, name: str, types: str):
+    """
+    Add users to the database User table
+
+    @param sub - User's sub
+    @param name - User's name
+    @param types - Types of eligibilities, in a stringified list
+    """
+
+    item = User(sub=sub, name=name, types=types)
+    db.session.add(item)
+    db.session.commit()
+
+
+@click.command("drop-db")
+def drop_db_command():
+    with current_app.app_context():
+        inspector = inspect(db.engine)
+
+        if inspector.get_table_names():
+            try:
+                click.echo(f"Users to be deleted: {User.query.count()}")
+                User.query.delete()
+                db.session.commit()
+            except Exception as e:
+                click.echo("Failed to query for Users", e)
+
+            db.drop_all()
+            click.echo("Database dropped.")
+        else:
+            click.echo("Database does not exist.")

eligibility_server/keypair.py

@@ -3,7 +3,7 @@
 from jwcrypto import jwk
 import requests
 
-from . import app
+from eligibility_server import app
 
 
 logger = logging.getLogger(__name__)