cBioPortal · sbabyanusha · Feb 1, 2023 · Nov 9, 2022 · Nov 9, 2022 · Nov 16, 2022
diff --git a/public/nst_nfosi_2022/LICENSE b/public/nst_nfosi_2022/LICENSE
diff --git a/public/nst_nfosi_2022/case_lists/cases_all.txt b/public/nst_nfosi_2022/case_lists/cases_all.txt
@@ -0,0 +1,6 @@
+cancer_study_identifier: nst_nfosi_2022
+stable_id: nst_nfosi_2022_all
+case_list_name: All samples
+case_list_description: All samples (19 samples)
+case_list_category: all_cases_in_study
+case_list_ids: 2-010_Neurofibroma	2-026_Neurofibroma	2-013_Plexiform_Neurofibroma	2-004_Plexiform_Neurofibroma	2-012_Neurofibroma	2-031_Cell_Line	2-017_Neurofibroma	2-021_Neurofibroma	2-019_Neurofibroma	2-029_Neurofibroma	2-023_Plexiform_Neurofibroma	2-014_Neurofibroma	2-001_Plexiform_Neurofibroma	2-006_Plexiform_Neurofibroma	2-032_Plexiform_Neurofibroma	2-015_Plexiform_Neurofibroma	2-031_Malignant_Peripheral_Nerve_Sheath_Tumor	2-016_Neurofibroma	2-015_Neurofibroma
diff --git a/public/nst_nfosi_2022/case_lists/cases_sequenced.txt b/public/nst_nfosi_2022/case_lists/cases_sequenced.txt
@@ -0,0 +1,6 @@
+cancer_study_identifier: nst_nfosi_2022
+stable_id: nst_nfosi_2022_sequenced
+case_list_name: Samples with mutation data
+case_list_description: Samples with mutation data (19 samples)
+case_list_category: all_cases_with_mutation_data
+case_list_ids: 2-010_Neurofibroma	2-026_Neurofibroma	2-013_Plexiform_Neurofibroma	2-014_Neurofibroma	2-001_Plexiform_Neurofibroma	2-006_Plexiform_Neurofibroma	2-004_Plexiform_Neurofibroma	2-032_Plexiform_Neurofibroma	2-015_Plexiform_Neurofibroma	2-016_Neurofibroma	2-012_Neurofibroma	2-031_Malignant_Peripheral_Nerve_Sheath_Tumor	2-031_Cell_Line	2-017_Neurofibroma	2-015_Neurofibroma	2-021_Neurofibroma	2-019_Neurofibroma	2-029_Neurofibroma	2-023_Plexiform_Neurofibroma
diff --git a/public/nst_nfosi_2022/data_clinical_patient.txt b/public/nst_nfosi_2022/data_clinical_patient.txt
diff --git a/public/nst_nfosi_2022/data_clinical_sample.txt b/public/nst_nfosi_2022/data_clinical_sample.txt
diff --git a/public/nst_nfosi_2022/data_mutations.txt b/public/nst_nfosi_2022/data_mutations.txt
diff --git a/public/nst_nfosi_2022/meta_clinical_patient.txt b/public/nst_nfosi_2022/meta_clinical_patient.txt
@@ -0,0 +1,4 @@
+cancer_study_identifier: nst_nfosi_2022
+genetic_alteration_type: CLINICAL
+datatype: PATIENT_ATTRIBUTES
+data_filename: data_clinical_patient.txt
diff --git a/public/nst_nfosi_2022/meta_clinical_sample.txt b/public/nst_nfosi_2022/meta_clinical_sample.txt
@@ -0,0 +1,4 @@
+cancer_study_identifier: nst_nfosi_2022
+genetic_alteration_type: CLINICAL
+datatype: SAMPLE_ATTRIBUTES
+data_filename: data_clinical_sample.txt
diff --git a/public/nst_nfosi_2022/meta_mutations.txt b/public/nst_nfosi_2022/meta_mutations.txt
@@ -0,0 +1,8 @@
+cancer_study_identifier: nst_nfosi_2022
+genetic_alteration_type: MUTATION_EXTENDED
+datatype: MAF
+stable_id: mutations
+show_profile_in_analysis_tab: true
+profile_name: Mutations
+profile_description: Mutation data from NF-OSI processing. The data were processed using the "sarek" nf-core pipeline.
+data_filename: data_mutations.txt
diff --git a/public/nst_nfosi_2022/meta_study.txt b/public/nst_nfosi_2022/meta_study.txt
@@ -0,0 +1,8 @@
+cancer_study_identifier: nst_nfosi_2022
+type_of_cancer: nst
+name: Nerve Sheath Tumors (John Hopkins, Sci Data 2020)
+description: Whole-exome sequencing of 18 patients with Nerve Sheath Tumors and their matched normals. The data is contributed by John Hopkins University researchers funded by the Neurofibromatosis Therapeutic Acceleration Program (NTAP). The reprocessing of the raw data is managed by the NF Open Science Initiative (<a href="https://nf.synapse.org/">NF Data Portal</a>).
+citation: Pollard et al. Sci Data 2020
+pmid: 32561749
+reference_genome: hg38
+groups: PUBLIC