Skip to content

Commit

Permalink
chore(prod): try to fix vcf chr transform for node2
Browse files Browse the repository at this point in the history
  • Loading branch information
davidlougheed committed Jan 18, 2024
1 parent bbc8f9e commit 807b70d
Showing 1 changed file with 2 additions and 2 deletions.
4 changes: 2 additions & 2 deletions epivar-prod/node2/config.js
Original file line number Diff line number Diff line change
Expand Up @@ -38,8 +38,8 @@ module.exports = {
vcfSampleNameConverter: name => name.split('_')[1], // name => name

/*
* VCF contigs have correct format, use identity function (default value)
* VCF contigs have chr prefix; ensure we prepend this without duplication.
*/
// vcfChrTransform: (chr) => chr,
vcfChrTransform: (chr) => "chr" + chr.replace(/^chr/, ""),
},
};

0 comments on commit 807b70d

Please sign in to comment.