chores: preparing for major release [skipci]

NEWS.md

@@ -31,7 +31,7 @@
    - For all functions except `extr_comptox`, a `query` column reports the IDs 
      searched. In `extr_comptox`, this info is in the `main_sheet` element. For 
      `extr_ice`, `query` values contain all IDs found.
-   - Results now contain rows with NA values for all columns except `query`.
+   - Results now contain rows with NA values for all columns (except `query`).
    - `extr_pprtv` and `extr_monograph` use `save_and_match` to output results 
      with NA for missing IDs.
 * Improved and extended all unit tests.

README.Rmd

@@ -78,7 +78,7 @@ exposure-related data.
 ```{r}
 library(extractox)
 # assays is null so all assays are retrieved
-ice_data <- extr_ice(casrn = c("50-00-0"), assays = NULL, verbose = FALSE) 
+ice_data <- extr_ice(casrn = c("50-00-0"), assays = NULL, verbose = FALSE)
 names(ice_data)
 ```
 
@@ -147,15 +147,18 @@ The function `extr_monograph` provides access to the WHO IARC Monographs databas
 and accepts queries using CASRN or the names of chemicals.
 
 ```{r}
-dat <- extr_monograph(search_type = "casrn", 
-                      ids = c("105-74-8", "120-58-1"),
-                      verbose = FALSE)
+dat <- extr_monograph(
+  search_type = "casrn",
+  ids = c("105-74-8", "120-58-1"),
+  verbose = FALSE
+)
 str(dat)
 
 # Example usage for name search
-dat2 <- extr_monograph(search_type = "name",
-                       ids = c("Aloe", "Schistosoma",  "Styrene")
-                       )
+dat2 <- extr_monograph(
+  search_type = "name",
+  ids = c("Aloe", "Schistosoma", "Styrene")
+)
 ```
 
 
@@ -173,8 +176,10 @@ The function `extr_chem_info` retrieves chemical information of IUPAC-named
 chemicals. A warning is displayed if the chemical is not found.
 
 ```{r}
-chem_info <- extr_chem_info(iupac_names = c("Formaldehyde", "Aflatoxin B1"),
-                            verbose = FALSE)
+chem_info <- extr_chem_info(
+  iupac_names = c("Formaldehyde", "Aflatoxin B1"),
+  verbose = FALSE
+)
 names(chem_info)
 ```
 
@@ -222,6 +227,7 @@ ctd_association <- extr_ctd(
   verbose = FALSE
 )
 
+names(ctd_association)
 
 # Get expresssion data
 ctd_expression <- extr_ctd(