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dev -> staging #1197

Merged
merged 2 commits into from
Feb 6, 2024
Merged

dev -> staging #1197

merged 2 commits into from
Feb 6, 2024

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nikellepetrillo
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Description

Give your PR a concise yet descriptive title.
Please explain the changes you made here.
Explain the motivation for making this change. What existing problem does the pull request solve?
Mention any issues fixed, addressed, or otherwise related to this pull request, including issue numbers or hard links for issues in other repos.
You can delete these instructions once you have written your PR description.


Checklist

If you can answer "yes" to the following items, please add a checkmark next to the appropriate checklist item(s) and notify our WARP documentation team by tagging either @ekiernan or @kayleemathews in a comment on this PR.

  • Did you add inputs, outputs, or tasks to a workflow?
  • Did you modify, delete or move: file paths, file names, input names, output names, or task names?
  • If you made a changelog update, did you update the pipeline version number?

nikellepetrillo and others added 2 commits February 5, 2024 15:25
* add summary task

* change diff from 1mb to 0 mb

* make logic more clear
* reblocking changes for BGE

reblocking test docker

fixing TDR index issue in reblock

fix

the rest of the bge changes

adding bge inputs

fixes

comment

renaming inputs

fix

* changelogs

* trying to fix tests

* moving test to scientific

* dragen gvcfs have a different file extension

* missed one

* not sure if this fixes the test because the input file is in a sample map

* addressing comments

* fixing bge tests

* fixing tests

* typo

* one more

* updating to gatk 4.5.0.0

* fixing vesion numbers

* missed one update to 4.5.0.0

* update for new version of VETS

---------

Co-authored-by: Nikelle Petrillo <[email protected]>
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github-actions bot commented Feb 6, 2024

DO NOT SQUASH MERGE!!!

@nikellepetrillo nikellepetrillo merged commit 899243a into staging Feb 6, 2024
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4 participants