Code

Staging -> Master#1163

Code

Merged

nikellepetrillo merged 28 commits intomasterbroadinstitute/warp:masterfrom stagingbroadinstitute/warp:stagingCopy head branch name to clipboardFeb 5, 2024

+2,662-1,432

Commits

Commits on Oct 25, 2023

• update paths to input files

  jessicaway

  committed
  5702559

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• update jg sample map

  jessicaway

  committed
  5c57a21

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Commits on Dec 20, 2023

• Km buildindices docs (#1158)

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  kayleemathews

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  45f6884

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• Lk pd2448 upstools (#1150)

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  ekiernan

  authored
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• PD-2435 Test bwa-mem2 step and run Intel distributed BWA-MEM2 (#1147)

  aawdeh

  authored
  83f5ece

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Commits on Jan 3, 2024

• Merge pull request #1162 from broadinstitute/develop

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  jessicaway

  authored
  f10e0a6

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• Merge branch 'develop' into jw_fix_jg_plumbing_test

  jessicaway

  committed
  dbc83cf

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Commits on Jan 4, 2024

• Lk pd2453 add bb tag (#1161)

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  ekiernan

  authored
  47e49b3

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Commits on Jan 5, 2024

• km paired-tag docs (#1165)

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  kayleemathews

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  ekiernan

  authored
  6fb03c1

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• Merge branch 'develop' into jw_fix_jg_plumbing_test

  jessicaway

  authored
  b2b48c7

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• Merge pull request #1166 from broadinstitute/jw_fix_jg_plumbing_test

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  jessicaway

  authored
  4ea11fb

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Commits on Jan 8, 2024

• Np jprb pd 2353 multiple star rsolo align (#1164)

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  3 peopleauthored
  15a924f

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Commits on Jan 9, 2024

• Np update multiome sci test (#1167)

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  nikellepetrillo

  authored
  59ae4d4

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• Merge pull request #1169 from broadinstitute/develop

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  nikellepetrillo

  authored
  23df266

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Commits on Jan 12, 2024

• PD-2422 BICAN_Optimus_2nymxis_Oct_2023 (#1152)

  aawdeh

  authored
  1279a69

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Commits on Jan 16, 2024

• Np multimapper param starsolo (#1172)

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  nikellepetrillo

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  kayleemathews

  authored
  f3e8d6e

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• added exit code to CompareTabix (#1174)

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  ekiernan

  authored
  e83f3fe

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Commits on Jan 18, 2024

• Lk pd 2452 add read length check (#1171)

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  ekiernan

  authored
  3e86adb

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Commits on Jan 26, 2024

• Lk pd 2464 batch methylome (#1181)

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  ekiernan

  authored
  4602a88

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Commits on Jan 29, 2024

• Np edit resources needed for bwa task / add logic to compareBams (#1183)

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  nikellepetrillo

  authored
  9b1f344

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Commits on Jan 30, 2024

• PD-2483 (#1182)

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  3 peopleauthored
  38200f5

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Commits on Jan 31, 2024

• PD-2476: Add task before fastqprocess to find number of splits (#1178)

  aawdeh

  authored
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Commits on Feb 1, 2024

• removed space (#1184)

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  ekiernan

  authored
  715a1ad

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• Lk pd 2455 pairedtag parsebarcodes (#1186)

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  ekiernan

  authored
  ff75140

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• Np move snm3c from beta pipelines (#1185)

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  nikellepetrillo

  authored
  0d7a553

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• Km snm3c overview doc (#1179)

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  kayleemathews

  and

  nikellepetrillo

  authored
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Commits on Feb 2, 2024

• Np fix snm3c test (#1190)

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  nikellepetrillo

  authored
  fc370b9

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• Merge pull request #1189 from broadinstitute/develop

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  nikellepetrillo

  authored
  91497b9

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