Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

ReblockGVCFs now takes GVCFs that are not in the same location as their index #1081

Merged
merged 2 commits into from
Sep 19, 2023

Conversation

meganshand
Copy link
Contributor

This change allows you to run ReblockGVCFs with input GVCFs in different locations than the index files (for example, if the data is in TDR).

@github-actions
Copy link

Remember to squash merge!

@meganshand
Copy link
Contributor Author

@jessicaway This is the change to ReblockGVCFs that will let GP run it themselves on data from TDR. Tests should pass (this change shouldn't change any outputs) so I think this is ready for review.

Copy link
Member

@jessicaway jessicaway left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

looks good 👍

@jessicaway
Copy link
Member

Joint genotyping test is failing for missing input. Our team is working on this. It can safely be ignored for now

@jessicaway jessicaway added the eng-only Scientific review not needed label Sep 19, 2023
@meganshand meganshand merged commit 5d992a2 into develop Sep 19, 2023
@meganshand meganshand deleted the ms_reblock_index branch September 19, 2023 18:39
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
eng-only Scientific review not needed
Projects
None yet
Development

Successfully merging this pull request may close these issues.

4 participants