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@tomkinsc tomkinsc released this 18 Aug 23:07
· 1003 commits to master since this release
v2.1.32.0
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Learn about vigilant mode.

new features:

  • most task runtime blocks now support cromwell auto memory scaling/retry
  • automated data release and delivery sarscov2_data_release
  • batch recalling of pango/nextclade lineages sarscov2_batch_relineage
  • improved automated BioSample registration and metadata handling from Broad CRSP samples and external non-Broad samples via GP pipeline
  • add sarscov2_biosample_load as optional subworkflow call at the beginning of sarscov2_illumina_full for fully automated use by Terra workflow launcher
  • updated/improved Picard-based illumina demux
  • move state public health reporting from sarscov2_illumina_full to sarscov2_data_release

bug fixes:

minor updates to docker images and vm shapes:

  • pangolin 3.1.11 / pangolearn 2021-08-09
  • nextclade 1.2.3
  • vadr 1.3
  • nextstrain 20210413T201712Z
  • sc2-rmd, viral-core

build changes:

  • GitHub Actions CI added, now primary. Travis CI still active at the moment
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