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@dpark01 dpark01 released this 04 Dec 16:53
· 1847 commits to master since this release
v2.1.10.0
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Learn about vigilant mode.

New or changed WDL workflows:

  • new workflow: subsample_by_metadata_with_focal [#161]

Changes:

  • rename workflow augur_from_newick to augur_export_only, add new workflow augur_from_mltree [#151]
  • drop support for trinity (pinned version) assembler [#168]
  • bump upstream docker images [#169, #163]
  • README changes [#162]

Fixes:

  • bugfix: isnvs_per_sample when specifying optional parameters [#160]
  • bugfixes for use of set -o pipefail [#175, #173]
  • bugfix: optional input handling in filter_bam_to_taxa [#171]

VM shape parameterization or changes to defaults:

  • mafft parameterization [#170]
  • memory increase to task filter_sequences_to_list [#159]
  • parameterize BEAST GPU settings [#158]
  • memory increase to assemble_refbased (specifically to task align_reads) [#157]
  • memory increase to task multi_align_mafft [#155]
  • memory increase & cpu decrease to task refine_augur_tree and ancestral_tree (the timetree invocations) [#153]
  • parameterize CPU count for task draft_augur_tree (iqtree) [#150]

DNAnexus:

  • update DNAnexus demux_launcher to v2 instance types [#156]
  • update instance types to v2 [#167]
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