demux_deplete: allow multiple biosample attribute files #561
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…adata/map info modify the demux_deplete workflow so it can accept multiple files containing biosample metadata/map info. This is useful for the scenario where a flowcell contains samples corresponding to multiple BioSample submissions (ex. one for each attribute package type; or submissions made gradually over time). If more than one file is provided, the the data will be merged via a full left outer join
…n sarscov2_illumina_full
tomkinsc
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ct-demux_deplete-allow_multiple_biosample_attribute_files
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demux_deplete: allow multiple biosample attribute files
This modifies the
demux_depleteworkflow so it can accept multiple files with each containing biosample metadata/map info. This new behavior is useful for the scenario where a flowcell contains samples for which multiple BioSample submissions have been made that separately (ex. one for each of several attribute package types; or submissions made gradually over time). If more than one file is provided, the the data will be merged via a full left outer join via tasks_utils.wdl::tsv_join()Note: This is a breaking change for workflows importing the
demux_depleteworkflow as a sub-workflow, since the inputbiosample_maphas been renamed tobiosample_map_tsvs.