Code

add reconstructR workflow#504

Code

Merged

github-merge-queue[bot] merged 18 commits intomasterbroadinstitute/viral-pipelines:masterfrom reconstructrbroadinstitute/viral-pipelines:reconstructrCopy head branch name to clipboardDec 19, 2023

+300-54

Commits

Commits on Dec 11, 2023

• update WDL syntax; add reconstructr task

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  71e62d0

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• correct the R invocation

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  6f93698

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Commits on Dec 12, 2023

• update with scripts to auto-decompress if necessary

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  c0dc14d

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• initial workflow for reconstructr

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  0768b71

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• typo

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  8879cfa

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• oops mafft needs one file

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  431220b

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Commits on Dec 15, 2023

• final bits of reconstruct_from_alignments workflow

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  41f3bbb

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• Merge branch 'master' into reconstructr

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  5a61f8c

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Commits on Dec 18, 2023

• change indent of heredoc inline python block

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  a2978ca

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• fix typo syntax

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  4f6c725

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• big docker image

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  442b2e8

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• fix

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  fa097fe

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• enforce harmonized file and sample names

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  37fb5c0

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• allow override of sample name

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  6c4094c

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• remove float factor

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  e697167

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• fix

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  f4c4b82

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• fix quoting

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  c4f319c

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Commits on Dec 19, 2023

• add telemetry to reconstructr

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  9bedb51

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