genbank prep and assemble_denovo updates#443

Merged

dpark01 merged 29 commits intomasterfrom dp-denovo

Dec 13, 2022

+344-199

Commits on Dec 3, 2022

Commits on Dec 5, 2022

fix wdl task download_annotations file namespace error when combined_out_prefix happens to be an accession; also prevent combined fasta from showing up in genomes_fasta
dpark01
committed

Commits on Dec 6, 2022

Commits on Dec 8, 2022

try activaet conda again
dpark01
committed

Commits on Dec 9, 2022

make assemble_denovo accept multiple input bams
dpark01
committed