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more disk for nextstrain; dockstore API fix #437

Merged
merged 5 commits into from
Oct 29, 2022
Merged

more disk for nextstrain; dockstore API fix #437

merged 5 commits into from
Oct 29, 2022

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dpark01
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@dpark01 dpark01 commented Oct 29, 2022 •
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Several short but urgent fixes:

  1. more disk space for filter sequences by length for nextstrain
  2. dockstore API now breaks if our yml is malformed with duplicates. Not sure how we got all these dupes in our yml but this PR cleans them up so the API is no longer broken.
  3. updates to nextclade output columns require some slight fixes to how we ingest in nextclade_one_sample

@dpark01 dpark01 changed the title more disk for nextstrain more disk for nextstrain; dockstore API fix Oct 29, 2022
@dpark01 dpark01 merged commit 039ac18 into master Oct 29, 2022
@dpark01 dpark01 deleted the dp-nextstrain branch October 29, 2022 10:27
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