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parameterize machine_mem_gb for ancestral_traits task #427

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merged 2 commits into from
Jun 10, 2022
Merged

parameterize machine_mem_gb for ancestral_traits task #427

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f57dc84
parameterize machine_mem_gb for ancestral_traits task
tomkinsc Jun 7, 2022
b74b8d6
Merge branch 'master' into ct-ancestral-trait-mem-param
tomkinsc Jun 10, 2022
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3 changes: 2 additions & 1 deletion pipes/WDL/tasks/tasks_nextstrain.wdl
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Expand Up @@ -1347,6 +1347,7 @@ task ancestral_traits {
File? weights
Float? sampling_bias_correction

Int? machine_mem_gb
String docker = "nextstrain/base:build-20211012T204409Z"
}
String out_basename = basename(tree, '.nwk')
Expand All @@ -1367,7 +1368,7 @@ task ancestral_traits {
>>>
runtime {
docker: docker
memory: "32 GB"
memory: select_first([machine_mem_gb, 32]) + " GB"
cpu : 4
disks: "local-disk 100 HDD"
dx_instance_type: "mem3_ssd1_v2_x4"
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