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pangolin docker update: pdata-1.8 #417

Merged
merged 1 commit into from
May 17, 2022
Merged

pangolin docker update: pdata-1.8 #417

merged 1 commit into from
May 17, 2022

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dpark01
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@dpark01 dpark01 commented May 3, 2022

Update pangolin docker image to quay.io/staphb/pangolin:4.0.6-pdata-1.8 (pdata 1.6 to 1.8)

  • Can detect various new Delta and (primarily) Omicron sublineages. Look at comment below and pango-designation release notes from v1.6 to v1.8 for complete list
  • Can detect recombinant lineages up through XU
  • 🚨 pangolearn analysis mode requires even more RAM than previously. I've found the minimum is roughly 16.5GB RAM 🚨
  • This docker image has swelled in size, despite our best attempts to keep it small. Docker image was 873MB, now is 2.59GB (compressed)

I recommend you check out the Pangolin documentation and release notes for more details:

@dpark01 dpark01 marked this pull request as ready for review May 17, 2022 18:51
@dpark01 dpark01 merged commit 791638b into master May 17, 2022
@dpark01 dpark01 deleted the pangolin branch May 17, 2022 18:52
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