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update pangolin docker #414

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merged 1 commit into from
Apr 13, 2022
Merged

update pangolin docker #414

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4 changes: 2 additions & 2 deletions pipes/WDL/tasks/tasks_sarscov2.wdl
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Original file line number Diff line number Diff line change
Expand Up @@ -10,7 +10,7 @@ task pangolin_one_sample {
Float? max_ambig
String? analysis_mode
Boolean update_dbs_now=false
String docker = "quay.io/staphb/pangolin:4.0.4-pdata-1.2.133"
String docker = "quay.io/staphb/pangolin:4.0.5-pdata-1.3"
}
String basename = basename(genome_fasta, ".fasta")
command <<<
Expand Down Expand Up @@ -91,7 +91,7 @@ task pangolin_many_samples {
String? analysis_mode
Boolean update_dbs_now=false
String basename
String docker = "quay.io/staphb/pangolin:4.0.4-pdata-1.2.133"
String docker = "quay.io/staphb/pangolin:4.0.5-pdata-1.3"
}
command <<<
set -ex
Expand Down
2 changes: 1 addition & 1 deletion requirements-modules.txt
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Expand Up @@ -7,5 +7,5 @@ broadinstitute/beast-beagle-cuda=1.10.5pre
broadinstitute/ncbi-tools=2.10.7.10
nextstrain/base=build-20211012T204409Z
andersenlabapps/ivar=1.3.1
quay.io/staphb/pangolin=4.0.4-pdata-1.2.133
quay.io/staphb/pangolin=4.0.5-pdata-1.3
nextstrain/nextclade=1.11.0