Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

correct inference of illumina run ID #275

Merged
merged 10 commits into from
Apr 30, 2021
Merged

correct inference of illumina run ID #275

merged 10 commits into from
Apr 30, 2021

Conversation

dpark01
Copy link
Member

@dpark01 dpark01 commented Apr 29, 2021

Previously, illumina run ID was inferred from the basename of the filename of the tarball (the File flowcell_tgz input). This was prone to error (if the upstream process didn't keep a consistent filename convention) and didn't work at all for DRS-based File inputs (since the filename isn't resolved at the workflow level anyway, only within the task).

This PR derives the run ID from the definitive source: the RunInfo.xml file.

@dpark01 dpark01 marked this pull request as ready for review April 30, 2021 00:47
@dpark01 dpark01 merged commit 730cd1a into master Apr 30, 2021
@dpark01 dpark01 deleted the dp-drsfix branch April 30, 2021 10:17
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

1 participant