call_api task and update sarscov2_illumina_full with task

[schaluva]

created task to call apis to make data tables
added api task into full illumina workflow -- assemblies and reads tables created as last task in full workflow

[dpark01]

Thanks @schaluva !

task looks good and thanks for adding both a standalone workflow as well as adding on to the full one.

Does it really need 10GB RAM? Seems unusually high.

Main thing I’d like to request is to alter the sarscov2_illumina_full workflow to make the Terra project and workspace name inputs optional inputs, and only call the new task if both inputs are defined. The new task is very Terra-centric and is our only non-portable WDL in this repository so far. That’s fine for the standalone new workflow: no one would ever want to run it outside of Terra (though maybe the new workflow should have “terra” somewhere in its name so users perusing dockstore don’t try to run it elsewhere). But the illumina full workflow should certainly remain cross platform if possible, and simply making the two new inputs optional should do the trick.

[dpark01]

Oh also, can you merge in the latest master branch so this is mergable?

[dpark01]

Thanks!

Later on when you get a chance, lets move that docker somewhere more institutional (e.g. broadinstitute) but lets merge this for now once the tests pass