New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

small updates #203

Merged

dpark01 merged 4 commits into master from dp-sc2-full

Jan 28, 2021

Member

dpark01 commented Jan 28, 2021

update staphb/pangolin container to 2.1.8-pangolearn-2021-01-22
add max_vadr_alerts optional parameter (default 0) to workflows sarscov2_genbank, sarscov2_illumina_full, and sarscov2_sra_to_genbank
reduce default value of min_genome_bases in sarscov2_genbank to match illumina_full and sra_to_genbank

dpark01 added 4 commits

January 27, 2021 16:45


          add knob fo vadr alerts

c7dcade


          update sarscov2_genbank to have similar parameters to illumina_full a…

e5bf78d

…nd sra_to_genbank


          bump the assembly counting to one step earlier to reduce waiting

6eb1591


          update pangolin/pangolearn

843014c

dpark01 merged commit 0231318 into master

dpark01 deleted the dp-sc2-full branch

January 28, 2021 21:20

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet