Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

remove recursion limit on find for RunInfo.xml #179

Merged
merged 1 commit into from
Dec 14, 2020
Merged

Conversation

dpark01
Copy link
Member

@dpark01 dpark01 commented Dec 12, 2020

Currently we look for RunInfo.xml using find with -maxdepth 3. This gets rid of that parameter and allows it to recurse the entire directory tree if needed.

New tarballs produced by BITS's GP walkup -> cloud service are producing tars that contain the entire directory tree (/seq/illumina_ext/etc...) and you have to traverse much more than three directories in to find the actual BCL directory.

Currently we look for RunInfo.xml using `find` with `-maxdepth 3`. This gets rid of that parameter and allows it to recurse the entire directory tree if needed.

New tarballs produced by BITS's GP walkup -> cloud service are producing tars that contain the entire directory tree (/seq/illumina_ext/etc...) and you have to traverse much more than three directories in to find the actual BCL directory.
@dpark01 dpark01 merged commit 7b6dd91 into master Dec 14, 2020
@dpark01 dpark01 deleted the dp-bits-tar-fix branch December 14, 2020 15:01
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

1 participant