Merge pull request #433 from broadinstitute/pangolin

update nextclade and vadr docker images
broadinstitute · Jul 12, 2022 · eb5507f · eb5507f
2 parents 7e90cb0 + 523d44c
commit eb5507f
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Showing 3 changed files with 4 additions and 4 deletions.
diff --git a/pipes/WDL/tasks/tasks_ncbi.wdl b/pipes/WDL/tasks/tasks_ncbi.wdl
@@ -924,7 +924,7 @@ task vadr {
     File   genome_fasta
     String vadr_opts = "--glsearch -s -r --nomisc --mkey sarscov2 --lowsim5seq 6 --lowsim3seq 6 --alt_fail lowscore,insertnn,deletinn"
 
-    String docker = "quay.io/staphb/vadr:1.4.1-models-1.3-2"
+    String docker = "quay.io/staphb/vadr:1.4.2"
     Int    minlen = 50
     Int    maxlen = 30000
   }

diff --git a/pipes/WDL/tasks/tasks_nextstrain.wdl b/pipes/WDL/tasks/tasks_nextstrain.wdl
@@ -13,7 +13,7 @@ task nextclade_one_sample {
         File? pcr_primers_csv
         File? virus_properties
         String? dataset_name
-        String docker = "nextstrain/nextclade:2.0.0"
+        String docker = "nextstrain/nextclade:2.3.0"
     }
     String basename = basename(genome_fasta, ".fasta")
     command {
@@ -98,7 +98,7 @@ task nextclade_many_samples {
         String?      dataset_name
         String       basename
         File?        genome_ids_setdefault_blank
-        String       docker = "nextstrain/nextclade:2.0.0"
+        String       docker = "nextstrain/nextclade:2.3.0"
     }
     command <<<
         set -e

diff --git a/requirements-modules.txt b/requirements-modules.txt
@@ -8,4 +8,4 @@ broadinstitute/ncbi-tools=2.10.7.10
 nextstrain/base=build-20211012T204409Z
 andersenlabapps/ivar=1.3.1
 quay.io/staphb/pangolin=4.1.1-pdata-1.11
-nextstrain/nextclade=2.0.0
+nextstrain/nextclade=2.3.0