Merge pull request #414 from broadinstitute/pangolin

update pangolin docker
broadinstitute · Apr 13, 2022 · da95f63 · da95f63
2 parents 32fb4a1 + 8e524bb
commit da95f63
Show file tree

Hide file tree

Showing 2 changed files with 3 additions and 3 deletions.
diff --git a/pipes/WDL/tasks/tasks_sarscov2.wdl b/pipes/WDL/tasks/tasks_sarscov2.wdl
@@ -10,7 +10,7 @@ task pangolin_one_sample {
         Float?  max_ambig
         String? analysis_mode
         Boolean update_dbs_now=false
-        String  docker = "quay.io/staphb/pangolin:4.0.4-pdata-1.2.133"
+        String  docker = "quay.io/staphb/pangolin:4.0.5-pdata-1.3"
     }
     String basename = basename(genome_fasta, ".fasta")
     command <<<
@@ -91,7 +91,7 @@ task pangolin_many_samples {
         String?      analysis_mode
         Boolean      update_dbs_now=false
         String       basename
-        String       docker = "quay.io/staphb/pangolin:4.0.4-pdata-1.2.133"
+        String       docker = "quay.io/staphb/pangolin:4.0.5-pdata-1.3"
     }
     command <<<
         set -ex

diff --git a/requirements-modules.txt b/requirements-modules.txt
@@ -7,5 +7,5 @@ broadinstitute/beast-beagle-cuda=1.10.5pre
 broadinstitute/ncbi-tools=2.10.7.10
 nextstrain/base=build-20211012T204409Z
 andersenlabapps/ivar=1.3.1
-quay.io/staphb/pangolin=4.0.4-pdata-1.2.133
+quay.io/staphb/pangolin=4.0.5-pdata-1.3
 nextstrain/nextclade=1.11.0