bug

broadinstitute · Nov 25, 2024 · 6f3ae1a · 6f3ae1a
1 parent 03cb88e
commit 6f3ae1a
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/pipes/WDL/tasks/tasks_ncbi.wdl b/pipes/WDL/tasks/tasks_ncbi.wdl
@@ -768,7 +768,7 @@ task biosample_to_genbank {
                     row['host'] = match.group(1)
                     if row['host'] == 'bovine_milk':
                       row['host'] = 'Cattle'
-                    assert host in out_headers_total
+                    assert 'host' in out_headers_total
               # override geo_loc_name if food_origin exists
               if row.get('food_origin','').strip():
                   print("overriding geo_loc_name with food_origin")