Merge pull request #420 from broadinstitute/pangolin

pangolin update data only
broadinstitute · May 18, 2022 · 39fa4f0 · 39fa4f0
2 parents 34c96fb + 5cdc15c
commit 39fa4f0
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/pipes/WDL/tasks/tasks_sarscov2.wdl b/pipes/WDL/tasks/tasks_sarscov2.wdl
@@ -19,7 +19,7 @@ task pangolin_one_sample {
         if [ -n "~{true='UPDATE' false='' update_dbs_now}" ]; then
             set +e
             # ignore failure of this step
-            pangolin --update
+            pangolin --update-data
             set -e
         fi
         date | tee DATE
@@ -99,7 +99,7 @@ task pangolin_many_samples {
         if [ -n "~{true='UPDATE' false='' update_dbs_now}" ]; then
             set +e
             # ignore failure of this step
-            pangolin --update
+            pangolin --update-data
             set -e
         fi
         date | tee DATE