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Merge pull request #183 from llangit-broad/patch-1
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Added link to miniwdl dev env diagram
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dpark01 authored Dec 21, 2020
2 parents 762b9a3 + 8c16bbe commit 2c39bdc
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4 changes: 3 additions & 1 deletion README.md
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Expand Up @@ -24,7 +24,9 @@ Workflows are continuously deployed to a [DNAnexus CI project](https://platform.

## Basic execution

The easiest way to get started is on a single, Docker-capable machine (your laptop, shared workstation, or virtual machine) using [miniWDL](https://github.com/chanzuckerberg/miniwdl). MiniWDL can be installed either via `pip` or `conda` (via conda-forge). After confirming that it works (`miniwdl run_self_test`, you can use [miniwdl run](https://miniwdl.readthedocs.io/en/latest/getting_started.html) to invoke WDL workflows from this repository.
<img src="https://raw.githubusercontent.com/openwdl/learn-wdl/master/images/miniwdl-dev.png" width=600>

The easiest way to get started is on a single, Python & Docker-capable machine (your laptop, shared workstation, or virtual machine) using [miniWDL](https://github.com/chanzuckerberg/miniwdl) as shown above. MiniWDL can be installed either via `pip` or `conda` (via conda-forge). After confirming that it works (`miniwdl run_self_test`, you can use [miniwdl run](https://miniwdl.readthedocs.io/en/latest/getting_started.html) to invoke WDL workflows from this repository.

For example, to list the inputs for the assemble_refbased workflow:

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