Merge pull request #478 from broadinstitute/ct-additional-beast-outputs

extend beast task and workflow to glob and output *.ops, *.rates, and *.root files
broadinstitute · Sep 8, 2023 · 26e43f3 · 26e43f3
2 parents 5f421c0 + d0cdfb1
commit 26e43f3
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diff --git a/pipes/WDL/tasks/tasks_interhost.wdl b/pipes/WDL/tasks/tasks_interhost.wdl
@@ -168,6 +168,9 @@ task beast {
   output {
     File        beast_log    = glob("*.log")[0]
     Array[File] trees        = glob("*.trees")
+    Array[File] ops          = glob("*.ops")
+    Array[File] rates        = glob("*.rates")
+    Array[File] root         = glob("*.root")
     File        beast_stdout = stdout()
   }
 

diff --git a/pipes/WDL/workflows/beast_gpu.wdl b/pipes/WDL/workflows/beast_gpu.wdl
@@ -13,6 +13,9 @@ workflow beast_gpu {
     output {
         File        beast_log    = beast.beast_log
         Array[File] trees        = beast.trees
+        Array[File] ops          = beast.ops
+        Array[File] rates        = beast.rates
+        Array[File] root         = beast.root
         String      beast_stdout = beast.beast_stdout
     }
 }