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demux_deplete: allow multiple biosample attribute files viral-pipelines CI #2705: Pull request #561 synchronize by tomkinsc
November 6, 2024 19:06 29m 2s ct-demux_deplete-allow_multiple_biosample_attribute_files
ct-demux_deplete-allow_multiple_biosample_attribute_files
November 6, 2024 19:06 29m 2s
initial WIP commit of a task and workflow to run delphy viral-pipelines CI #2704: Pull request #560 synchronize by tomkinsc
November 6, 2024 19:06 49s ct-add-delphy-task-and-workflow
ct-add-delphy-task-and-workflow
November 6, 2024 19:06 49s
Merge branch 'master' into ct-demux_deplete-allow_multiple_biosample_… viral-pipelines CI #2703: Commit bd5b39c pushed by tomkinsc
November 6, 2024 19:06 29m 23s ct-demux_deplete-allow_multiple_biosample_attribute_files
ct-demux_deplete-allow_multiple_biosample_attribute_files
November 6, 2024 19:06 29m 23s
Merge branch 'master' into ct-add-delphy-task-and-workflow viral-pipelines CI #2702: Commit 2d29afa pushed by tomkinsc
November 6, 2024 19:06 46s ct-add-delphy-task-and-workflow
ct-add-delphy-task-and-workflow
November 6, 2024 19:06 46s
s/Array[File]+/Array[File?]+/g for tsv_files input in terra_tsv_to_ta… viral-pipelines CI #2701: Commit 4e2beb9 pushed by tomkinsc
November 6, 2024 19:05 28m 50s master
master
November 6, 2024 19:05 28m 50s
s/Array[File]+/Array[File?]+/g for tsv_files input in terra_tsv_to_table.wdl viral-pipelines CI #2700: Pull request #563 synchronize by tomkinsc
November 6, 2024 17:56 29m 51s ct-terra-troubleshoot-undefined-input-files
ct-terra-troubleshoot-undefined-input-files
November 6, 2024 17:56 29m 51s
Merge branch 'master' into ct-terra-troubleshoot-undefined-input-files viral-pipelines CI #2699: Commit 4322f6e pushed by tomkinsc
November 6, 2024 17:56 29m 45s ct-terra-troubleshoot-undefined-input-files
ct-terra-troubleshoot-undefined-input-files
November 6, 2024 17:56 29m 45s
demux_deplete: allow multiple biosample attribute files viral-pipelines CI #2698: Pull request #561 synchronize by tomkinsc
November 6, 2024 17:56 31m 29s ct-demux_deplete-allow_multiple_biosample_attribute_files
ct-demux_deplete-allow_multiple_biosample_attribute_files
November 6, 2024 17:56 31m 29s
add task: download_from_url() to download a URL to a file viral-pipelines CI #2697: Pull request #562 synchronize by tomkinsc
November 6, 2024 17:56 29m 34s ct-add-task-get-from-web
ct-add-task-get-from-web
November 6, 2024 17:56 29m 34s
Merge branch 'master' into ct-add-task-get-from-web viral-pipelines CI #2696: Commit f7df2e4 pushed by tomkinsc
November 6, 2024 17:56 29m 41s ct-add-task-get-from-web
ct-add-task-get-from-web
November 6, 2024 17:56 29m 41s
attempt at fixing OpenBLAS-related nproc limit viral-pipelines CI #2695: Pull request #553 synchronize by tomkinsc
November 6, 2024 17:56 1m 24s ct-bugfix-depletion-nproc-limit
ct-bugfix-depletion-nproc-limit
November 6, 2024 17:56 1m 24s
Merge branch 'master' into ct-demux_deplete-allow_multiple_biosample_… viral-pipelines CI #2694: Commit 67151dc pushed by tomkinsc
November 6, 2024 17:56 29m 20s ct-demux_deplete-allow_multiple_biosample_attribute_files
ct-demux_deplete-allow_multiple_biosample_attribute_files
November 6, 2024 17:56 29m 20s
Merge branch 'master' into ct-bugfix-depletion-nproc-limit viral-pipelines CI #2693: Commit 65a0782 pushed by tomkinsc
November 6, 2024 17:56 1m 27s ct-bugfix-depletion-nproc-limit
ct-bugfix-depletion-nproc-limit
November 6, 2024 17:56 1m 27s
limit GH build concurrency (#549) viral-pipelines CI #2692: Commit c269357 pushed by tomkinsc
November 6, 2024 17:55 30m 23s master
master
November 6, 2024 17:55 30m 23s
limit GH build concurrency viral-pipelines CI #2691: Pull request #549 synchronize by tomkinsc
November 5, 2024 20:12 29m 21s ct-bugfix-dx-deploy-failures
ct-bugfix-dx-deploy-failures
November 5, 2024 20:12 29m 21s
Merge branch 'master' into ct-bugfix-dx-deploy-failures viral-pipelines CI #2690: Commit 60e7fc5 pushed by tomkinsc
November 5, 2024 20:12 30m 13s ct-bugfix-dx-deploy-failures
ct-bugfix-dx-deploy-failures
November 5, 2024 20:12 30m 13s
add deduplication of sequences by ID in augur_from_assemblies (#564) viral-pipelines CI #2689: Commit 8b7731c pushed by tomkinsc
November 5, 2024 20:12 29m 34s master
master
November 5, 2024 20:12 29m 34s
limit GH build concurrency viral-pipelines CI #2688: Pull request #549 synchronize by tomkinsc
November 5, 2024 17:45 30m 39s ct-bugfix-dx-deploy-failures
ct-bugfix-dx-deploy-failures
November 5, 2024 17:45 30m 39s
Merge branch 'master' into ct-bugfix-dx-deploy-failures viral-pipelines CI #2687: Commit 09addac pushed by tomkinsc
November 5, 2024 17:45 5m 37s ct-bugfix-dx-deploy-failures
ct-bugfix-dx-deploy-failures
November 5, 2024 17:45 5m 37s
initial WIP commit of a task and workflow to run delphy viral-pipelines CI #2686: Pull request #560 synchronize by tomkinsc
November 5, 2024 17:45 44s ct-add-delphy-task-and-workflow
ct-add-delphy-task-and-workflow
November 5, 2024 17:45 44s
Merge branch 'master' into ct-add-delphy-task-and-workflow viral-pipelines CI #2685: Commit 12347ab pushed by tomkinsc
November 5, 2024 17:45 43s ct-add-delphy-task-and-workflow
ct-add-delphy-task-and-workflow
November 5, 2024 17:45 43s
demux_deplete: allow multiple biosample attribute files viral-pipelines CI #2684: Pull request #561 synchronize by tomkinsc
November 5, 2024 17:45 30m 26s ct-demux_deplete-allow_multiple_biosample_attribute_files
ct-demux_deplete-allow_multiple_biosample_attribute_files
November 5, 2024 17:45 30m 26s
Merge branch 'master' into ct-demux_deplete-allow_multiple_biosample_… viral-pipelines CI #2683: Commit 730201c pushed by tomkinsc
November 5, 2024 17:45 6m 3s ct-demux_deplete-allow_multiple_biosample_attribute_files
ct-demux_deplete-allow_multiple_biosample_attribute_files
November 5, 2024 17:45 6m 3s
add task: download_from_url() to download a URL to a file viral-pipelines CI #2682: Pull request #562 synchronize by tomkinsc
November 5, 2024 17:45 36m 28s ct-add-task-get-from-web
ct-add-task-get-from-web
November 5, 2024 17:45 36m 28s
s/Array[File]+/Array[File?]+/g for tsv_files input in terra_tsv_to_table.wdl viral-pipelines CI #2681: Pull request #563 synchronize by tomkinsc
November 5, 2024 17:45 26m 16s ct-terra-troubleshoot-undefined-input-files
ct-terra-troubleshoot-undefined-input-files
November 5, 2024 17:45 26m 16s