Code

skani updates#44

Code

Merged

dpark01 merged 8 commits intomasterbroadinstitute/viral-assemble:masterfrom dp-scaffoldbroadinstitute/viral-assemble:dp-scaffoldCopy head branch name to clipboardMar 28, 2024

+4,588-10

Commits

Commits on Mar 28, 2024

• change default m and c for skani to even lower values based on experimentation on rhino/entero genomes

  dpark01

  committed
  3045822

• new default params for skani are able to detect across lasv more

  dpark01

  committed
  8783d26

• add some (failing) tests to require a certain output order from skani

  dpark01

  committed
  3f54202

• fix python path

  dpark01

  committed
  3b47071

• fix test imports

  dpark01

  committed
  2edbb6e

• clean up fasta headers in unit test to compare to expected

  dpark01

  committed
  895a557

• re-order skani output tsvs by ANI*Total_bases_covered

  dpark01

  committed
  28aed63

• update expected order

  dpark01

  committed
  3aa29ec