skani-based reference selection tools #39
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This PR adds the following:
assemble.skani.SkaniToolpython classassembly.cluster_references_aniwhich takes a set of reference genomes and identifies clusters of ANI-based similarityassembly.skani_contigs_to_refswhich takes a set of contigs and reference genomes and identifies the closest matching reference genomes of each cluster of reference genomesassemble.skani.UndirectedGraph) and the entry pointassembly.skani_contigs_to_refs