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build and dependency updates #37

Merged
merged 8 commits into from
Mar 11, 2024
Merged

build and dependency updates #37

merged 8 commits into from
Mar 11, 2024

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dpark01
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@dpark01 dpark01 commented Mar 11, 2024

This PR updates some build actions and software dependencies. In particular:

  • updates Docker baseimage from viral-core 2.2.4 to 2.3.0
  • bugfix (first introduced in viral-classify) to include viral-core conda dependencies during installation of viral-assembly packages so that the mamba resolver doesn't downgrade any viral-core packages
  • adds a number of conda dependencies for ANI and mash based evaluation
  • removes scheduled builds from GH Actions and updates some GH actions versions
  • fixes some readthedocs build items

@dpark01 dpark01 requested a review from tomkinsc March 11, 2024 14:48
@dpark01 dpark01 marked this pull request as ready for review March 11, 2024 14:50
@dpark01 dpark01 merged commit feecaa7 into master Mar 11, 2024
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@dpark01 dpark01 deleted the dp-scaffold branch March 11, 2024 17:54
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@tomkinsc tomkinsc tomkinsc approved these changes

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@dpark01 @tomkinsc