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dpark01 committed Mar 19, 2024
1 parent 4c48a3f commit ab3f195
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion assembly.py
Original file line number Diff line number Diff line change
Expand Up @@ -402,7 +402,7 @@ def skani_contigs_to_refs(inContigs, inRefs, out_skani_dist, out_skani_dist_filt

skani = assemble.skani.SkaniTool()
clusters = skani.find_reference_clusters(inRefs, threads=threads)
skani.find_closest_references(inContigs, inRefs, out_skani_dist, threads=threads)
skani.find_closest_reference(inContigs, inRefs, out_skani_dist, threads=threads)
refs_hit = set()
refs_hit_by_cluster = set()

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