additional semi join #947
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additional semi join #947
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hanars
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Nov 1, 2024
bpblanken
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Nov 5, 2024
* add task to write relatedness check to tsv (#930) * add task to write relatedness check to tsv * fix requirements * relatedness_check_table_path * add relatedness check file path to metadata.json * Benb/use metadata as source of family table load (#936) * use run metadata as source of family table load * ruff * Support gcs dirs in rsync (#932) * Support gcs dirs in rsync * ws * Gencode refactor to remove gcs (#934) * Gencode refactor to remove gcs * Fix * additional semi join (#947) * metadata parameters refactor (#946) * metadata parameters refactor * fix missing param * tweak * missed one * last one * fix test * last few bugfixes * fix * bump * missed one * change parameter type due to confusing bug * push * enum * Parse clinvar version from header (#949) * Parse clinvar version from header * responses activate * fix test * Dependency reordering so that `ValidateCallsetTask` runs before updating the reference data. (#950) * Parse clinvar version from header * Dependency reordering for reference data updates and validation * ruff * missed one * Revert relatedness changes * push * Fix import issue * Fix sample type * ruff * Fix import mocking * imports * responses activate * fix test * Tweaks * comment * Benb/check parsed clinvar version in complete (#951) * Parse clinvar version from header * First pass * Bump hail tables to https * correct dataset/dataset types * Fix clinvar mito * Fix combined * Dependency reordering for reference data updates and validation * ruff * missed one * Revert relatedness changes * push * Fix import issue * Fix sample type * ruff * Fix import mocking * imports * Missed one * First mocking pass * Finish mocks in reference data * responses activate * ruff * commas * fix test * Update compare_globals.py * import --------- Co-authored-by: Julia Klugherz <[email protected]>
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