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Upgrade to Java 17.#1833

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lbergelson merged 18 commits intomasterbroadinstitute/picard:masterfrom cn_java_17broadinstitute/picard:cn_java_17Copy head branch name to clipboardFeb 14, 2023

+345-238

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Commits on Feb 14, 2023

• Upgrade to Java 17.

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  8dd74ee

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• Java 17 source changes.

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  edce60f

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• Try Nashorn engine replacement, add --add-opens.

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• Update BamToBfq test data (GZIPOutputStream previously wrote the value 0 in the GZIP header "OS" value, but now uses -1 (OS_UNKNOWN)).

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• Port doclet to Java 17 and new Barclay doclet API.

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• Temp commit to remove doclet until a Java 17 Barclay is released.

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  6b7c759

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• Upgrade docker.

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• Fix repos.

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• Move --add-opens to tet tasks only.

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  e026abf

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• Fix maven components.

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• Restore doclet code; upgrade to Barclay 5.0.0; rebase to pick up github actions.

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• Remove .travis.yml, which is now obsolete.

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• Restore DocumentationGenerationIntegrationTest.

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• Check Java version (gradle plugin must use the correct JVM).

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• Code review comments.

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• Update README.md Java reqs.

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  3f9505a

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• Fix publishing.

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  4894fdc

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• Remove redundant test directive.

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