Testing overhaul (#179) #39
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| name: WDL Tests | |
| on: | |
| push: | |
| branches: | |
| - main | |
| pull_request: | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| validate: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: ./.github/actions/install-cromwell | |
| with: | |
| CROMWELL_VERSION: 87 | |
| - name: Womtool Validate | |
| run: find . -name '*.wdl' | xargs -tI {} java -jar ${WOMTOOL_JAR} validate {} | |
| test: | |
| needs: validate | |
| runs-on: ubuntu-latest | |
| permissions: | |
| contents: 'read' | |
| id-token: 'write' | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - id: auth | |
| name: 'Authenticate to Google Cloud' | |
| uses: 'google-github-actions/auth@v2' | |
| with: | |
| workload_identity_provider: 'projects/1038484894585/locations/global/workloadIdentityPools/github-wi-pool/providers/github-wi-provider' | |
| service_account: palantir-workflows-service-acc@broad-dsde-methods.iam.gserviceaccount.com | |
| - uses: ./.github/actions/install-cromwell | |
| with: | |
| CROMWELL_VERSION: 87 | |
| - uses: ./.github/actions/install-watt | |
| with: | |
| WATT_VERSION: v1.1 | |
| - name: Run tests with WATT | |
| run: python ~/watt/watt.py -e ${CROMWELL_JAR} -c test/watt_config.yml --cromwell-config test/simple_cromwell.conf -p 50 --executor-log-prefix cromwell_logs/ | |
| - uses: actions/upload-artifact@v4 | |
| if: always() | |
| with: | |
| name: cromwell_logs | |
| path: cromwell_logs/ |