Update to latest version of ah_var_store gatk override jar #7793
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mcovarr
reviewed
Apr 20, 2022
| @@ -14,7 +14,7 @@ workflow GvsCreateFilterSet { | |||
| Array[String] snp_recalibration_annotation_values = ["AS_QD", "AS_MQRankSum", "AS_ReadPosRankSum", "AS_FS", "AS_MQ", "AS_SOR"] | |||
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| File interval_list = "gs://gcp-public-data--broad-references/hg38/v0/wgs_calling_regions.hg38.noCentromeres.noTelomeres.interval_list" | |||
| File gatk_override = "gs://broad-dsp-spec-ops/scratch/bigquery-jointcalling/jars/ah_var_store_20220406/gatk-package-4.2.0.0-480-gb62026a-SNAPSHOT-local.jar" | |||
| File gatk_override = "gs://broad-dsp-spec-ops/scratch/bigquery-jointcalling/jars/ah_var_store_20220415/gatk-package-4.2.0.0-492-g1387d47-SNAPSHOT-local.jar" | |||
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this is at least a couple of revisions back now so it wouldn't be picking up the zero-padding improvements from #7783
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True - I'll rebuild it - but the only gatk jar improvements in 7783 were really just cleaning up some logging.
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oh yeah you're right... wow did I misremember that code 😅
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in an ideal world, I think we would also create these ahead of our releases and have one named for the release---so we'd have a Charlie jar (though we've re-made it a few times over the last few weeks....)
mcovarr
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Apr 20, 2022
RoriCremer
approved these changes
Apr 20, 2022
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This was referenced Mar 17, 2023
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