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Updated M2 WDL README with Funcotator info. #5892

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merged 2 commits into from
Apr 18, 2019

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Fixes #5889

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codecov-io commented Apr 18, 2019

Codecov Report

Merging #5892 into master will decrease coverage by 6.72%.
The diff coverage is n/a.

@@              Coverage Diff               @@
##              master     #5892      +/-   ##
==============================================
- Coverage     86.843%   80.123%   -6.72%     
+ Complexity     32321     30670    -1651     
==============================================
  Files           1991      1991              
  Lines         149308    149308              
  Branches       16486     16486              
==============================================
- Hits          129663    119630   -10033     
- Misses         13630     23869   +10239     
+ Partials        6015      5809     -206
Impacted Files Coverage Δ Complexity Δ
...dorientation/CollectF1R2CountsIntegrationTest.java 0.714% <0%> (-99.286%) 1% <0%> (-14%)
...kers/filters/VariantFiltrationIntegrationTest.java 0.826% <0%> (-99.174%) 1% <0%> (-25%)
.../walkers/bqsr/BaseRecalibratorIntegrationTest.java 1.031% <0%> (-98.969%) 1% <0%> (-7%)
...s/variantutils/VariantsToTableIntegrationTest.java 1.042% <0%> (-98.958%) 1% <0%> (-21%)
...ers/vqsr/FilterVariantTranchesIntegrationTest.java 1.053% <0%> (-98.947%) 1% <0%> (-5%)
...on/FindBreakpointEvidenceSparkIntegrationTest.java 1.754% <0%> (-98.246%) 1% <0%> (-6%)
...bender/tools/spark/PileupSparkIntegrationTest.java 2.041% <0%> (-97.959%) 2% <0%> (-13%)
...tute/hellbender/tools/FlagStatIntegrationTest.java 2.083% <0%> (-97.917%) 1% <0%> (-5%)
...rs/variantutils/SelectVariantsIntegrationTest.java 0.25% <0%> (-97.75%) 1% <0%> (-70%)
...alkers/rnaseq/SplitNCigarReadsIntegrationTest.java 2.5% <0%> (-97.5%) 1% <0%> (-9%)
... and 156 more

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👍

@jonn-smith jonn-smith merged commit 3e201cf into master Apr 18, 2019
@jonn-smith jonn-smith deleted the jts_M2_WDL_Funcotator_Documentation_5889 branch April 18, 2019 18:31
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Update the M2 WDL readme with Funcotator instead of Oncotator
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