parse map to list to avoid brackets and spaces in vcf output (#7168)

broadinstitute · Apr 6, 2021 · 98ead1f · 98ead1f
1 parent 4e52873
commit 98ead1f
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/src/main/java/org/broadinstitute/hellbender/tools/variantdb/nextgen/ExtractCohortEngine.java b/src/main/java/org/broadinstitute/hellbender/tools/variantdb/nextgen/ExtractCohortEngine.java
@@ -505,7 +505,7 @@ private VariantContext filterVariants(VariantContext mergedVC, HashMap<Allele, H
         final VariantContextBuilder builder = new VariantContextBuilder(mergedVC);
 
         builder.attribute(GATKVCFConstants.AS_VQS_LOD_KEY, relevantVqsLodMap.values().stream().map(val -> val.equals(Double.NaN) ? VCFConstants.EMPTY_INFO_FIELD : val.toString()).collect(Collectors.toList()));
-        builder.attribute(GATKVCFConstants.AS_YNG_STATUS_KEY, relevantYngMap.values());
+        builder.attribute(GATKVCFConstants.AS_YNG_STATUS_KEY, relevantYngMap.values().stream().collect(Collectors.toList()));
 
         int refLength = mergedVC.getReference().length();