Adding a test to capture an expected edge case in Reblocking #4506

Job	Run time
build and push gatk docker to artifacts	17m 23s
build and push gatk docker to artifacts	17m 23s
Validate script WDLs using womtools	56s
Validate script WDLs using womtools	56s
check if the environment has privileges	1s
check if the environment has privileges	1s
Validate generated WDLs using womtools	15m 24s
Validate generated WDLs using womtools	15m 24s
WDL test RUN_CNV_GERMLINE_COHORT_WDL on cromwell	25m 37s
WDL test RUN_CNV_GERMLINE_COHORT_WDL on cromwell	25m 37s
WDL test RUN_CNV_GERMLINE_CASE_WDL on cromwell	26m 30s
WDL test RUN_CNV_GERMLINE_CASE_WDL on cromwell	26m 30s
WDL test RUN_CNV_SOMATIC_WDL on cromwell	24m 42s
WDL test RUN_CNV_SOMATIC_WDL on cromwell	24m 42s
WDL test RUN_M2_WDL on cromwell	8m 3s
WDL test RUN_M2_WDL on cromwell	17m 24s
WDL test RUN_VCF_SITE_LEVEL_FILTERING_WDL on cromwell	13m 26s
WDL test RUN_VCF_SITE_LEVEL_FILTERING_WDL on cromwell	13m 26s
Java 17.0.6+10 build and test cloud	16m 46s
Java 17.0.6+10 build and test cloud	16m 46s
Java 17.0.6+10 build and test integration	32m 3s
Java 17.0.6+10 build and test integration	32m 3s
Java 17.0.6+10 build and test unit	20m 19s
Java 17.0.6+10 build and test unit	20m 19s
Java 17.0.6+10 test on docker integration	37m 25s
Java 17.0.6+10 test on docker integration	37m 25s
Java 17.0.6+10 test on docker unit	24m 2s
Java 17.0.6+10 test on docker unit	24m 2s
Java 17.0.6+10 test on docker variantcalling	31m 48s
Java 17.0.6+10 test on docker variantcalling	31m 48s
Java 17.0.6+10 test on docker conda	25m 30s
Java 17.0.6+10 test on docker conda	25m 30s
	10h 49m 11s

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