fixes

broadinstitute · Jan 6, 2021 · c38a7d6 · c38a7d6
1 parent 328541d
commit c38a7d6
Showing 1 changed file with 4 additions and 4 deletions.
diff --git a/example/1_tutorial_tangram.ipynb b/example/1_tutorial_tangram.ipynb
@@ -455,7 +455,7 @@
     "import torch\n",
     "\n",
     "# add path of Tangram repository for importing it\n",
-    "sys.path.append(\"/home/tbiancal/git/Tangram\") \n",
+    "sys.path.append(\"./..\") \n",
     "import tangram as tg"
    ]
   },
@@ -477,7 +477,7 @@
     "- Mapping should be interrupted after the score plateaus,which can be controlled by passing the `num_epochs` parameter. \n",
     "- The score measures the similarity between the gene expression of the mapped cells vs spatial data: higher score means \n",
     "- Note that we obtained excellent mapping even if Tangram converges to a low scores (the typical case is when the spatial data are very sparse): we use the score merely to assess convergence.\n",
-    "- If you are running Tangram with a GPU, uncomment`device=gpu` and comment the line `device=cpu`. On a MacBook Pro 2018, it takes ~1h to run. On a P100 GPU it should be done in a few minutes.\n",
+    "- If you are running Tangram with a GPU, uncomment`device=cuda: 0` and comment the line `device=cpu`. On a MacBook Pro 2018, it takes ~1h to run. On a P100 GPU it should be done in a few minutes.\n",
     "- For this basic mapping, we do not use regularizers (hence the `NaN`). More sophisticated loss functions can be used using the Tangram library (refer to manuscript or dive into the code)."
    ]
   },
@@ -523,7 +523,7 @@
     "    adata_cells=ad_sc,\n",
     "    adata_space=ad_sp,\n",
     "    device='cpu',\n",
-    "#     device='gpu',\n",
+    "#     device='cuda: 0',\n",
     ")"
    ]
   },
@@ -570,7 +570,7 @@
     "import torch\n",
     "\n",
     "# add path of Tangram repository for importing it\n",
-    "sys.path.append(\"/home/tbiancal/git/Tangram\") \n",
+    "sys.path.append(\"./..\") \n",
     "import tangram as tg"
    ]
   },