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19 Open 84 Closed
19 Open 84 Closed
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Issues list

--hic_gamma and --hic_scale parameter for ENCFF621AIY.hic
#239 opened Sep 29, 2024 by L1angyan
1
Can not make the juice dump HiC data for chr9 on K562_combined_30.hic with resolution lower than 25000
#238 opened Sep 14, 2024 by nttg8100
silencer
#236 opened Sep 4, 2024 by tan5251
Duplicate score_column in predict.py
#235 opened Aug 27, 2024 by nttg8100
1
Where can i find the Reference files for the mouse Reference genome mm10
#232 opened Aug 6, 2024 by mano2991
qnrom in config.yaml for different cells
#231 opened Aug 3, 2024 by JasonLinjc
1
Quantile normalization
#230 opened Jul 10, 2024 by engreitz
@argschwind
predict.py
#228 opened Jun 24, 2024 by BERICP01
Difference between EnhancerPredictionsFull_threshold0.02_self_promoter.tsv and EnhancerPredictions_threshold0.02_self_promoter.tsv
#223 opened May 10, 2024 by NicoleYY77
3
promoter-promoter and enh-promoter interactions
#72 opened Nov 26, 2022 by Abeer-hes
Is it possible for you to add .bigwig as inputfile format option for Quantifying Enhancer Activity?
#71 opened Oct 6, 2022 by ezioljj
Refseq gene list
#61 opened Oct 14, 2021 by yussufhajjaj
3
Replicates
#58 opened Jul 16, 2021 by szhang0112
where to download mm10 curated TSS
#55 opened Jun 25, 2021 by cindy264
without bam file
#51 opened May 13, 2021 by BenxiaHu
3 questions about code usage (white list and bioreplicates)
#44 opened Dec 1, 2020 by sdjebali
1
Extend availability of reference files to other genomes?
#39 opened Oct 8, 2020 by connorrogerson
3
bamcompare input corrected chipseq file
#30 opened Aug 22, 2020 by girdhar3
1
what's the preferred setting when mean associated enhancers is lower than 2 ?
#29 opened Aug 20, 2020 by lmangnier
1
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