Release 4.0-beta15
Pre-release
Pre-release
- Speed: reduce overhead in tree operations.
- Models: add relaxed-rs07 that allows rate to vary on different branches.
- Non-equilibrium models now work with variable alignments.
- Syntax: cmd-line functions now look like
|w: gy94(omega=w)|
- Syntax: cmd-line functions can now take two arguments like
|x y: x + y|
. - Bug fixes:
- Fix inferring the alignment on a fixed topology (rooted or unrooted).
- Invalidate compiled modules if the executable changes.
- Fix consensus-tree and branch lengths ignoring burnin when not specified as percent.
- Fix (unused) code that integrates out alignments when SPR-attaching on every branch.