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Release 4.0-beta15

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@github-actions github-actions released this 30 Jul 02:25
  • Speed: reduce overhead in tree operations.
  • Models: add relaxed-rs07 that allows rate to vary on different branches.
  • Non-equilibrium models now work with variable alignments.
  • Syntax: cmd-line functions now look like |w: gy94(omega=w)|
  • Syntax: cmd-line functions can now take two arguments like |x y: x + y|.
  • Bug fixes:
    • Fix inferring the alignment on a fixed topology (rooted or unrooted).
    • Invalidate compiled modules if the executable changes.
    • Fix consensus-tree and branch lengths ignoring burnin when not specified as percent.
    • Fix (unused) code that integrates out alignments when SPR-attaching on every branch.