Release 4.0-beta10
Pre-release
Pre-release
New features:
- Codon models can now use all known genetic codes (https://www.ncbi.nlm.nih.gov/Taxonomy/Utils/wprintgc.cgi)
- Equilibrium non-reversible models now work with variable-alignment analyses.
- Improve help: colorized, improved signatures, more readable types.
- Add commands
bali-phy print <expression>
,bali-phy run <Prog> <arg1> <arg2>
,bali-phy model <Model> <arg1> <arg2>
.
Bug fixes:
- Fix non-standard genetic codes.
- Fix specifying
Codons(DNA)
andCodons(DNA, <code> )
- Fix density for Exp-transformed distributions like log-normal.
Misc:
- Refactor Numeric classes
Log Double
andProb
- Allow testing
isInfinite x
andisNan x
in Haskell.