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📝 update readme
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subercui committed Dec 13, 2023
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Expand Up @@ -26,7 +26,6 @@ scGPT works with Python >= 3.7.13 and R >=3.6.1. Please make sure you have the c
scGPT is available on PyPI. To install scGPT, run the following command:

```bash
pip install torch==1.13.0
pip install scgpt "flash-attn<1.0.5" # optional, recommended
# As of 2023.09, pip install may not run with new versions of the google orbax package, if you encounter related issues, please use the following command instead:
# pip install scgpt "flash-attn<1.0.5" "orbax<0.1.8"
Expand Down Expand Up @@ -74,7 +73,7 @@ Please see our example code in [examples/finetune_integration.py](examples/finet
- [ ] Finetuning examples for multi-omics integration, cell type annotation, perturbation prediction, cell generation
- [x] Example code for Gene Regulatory Network analysis
- [x] Documentation website with readthedocs
- [ ] Bump up to pytorch 2.0
- [x] Bump up to pytorch 2.0
- [x] New pretraining on larger datasets
- [x] Reference mapping example
- [ ] Publish to huggingface model hub
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