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Change skew normal quantile to use bracket_and_solve_root. #247

Change skew normal quantile to use bracket_and_solve_root.

Change skew normal quantile to use bracket_and_solve_root. #247

Workflow file for this run

# Copyright 2020-2021 Peter Dimov
# Copyright 2021 Andrey Semashev
# Copyright 2021 Alexander Grund
# Copyright 2022 James E. King III
# Copyright 2023 Matt Borland
#
# Distributed under the Boost Software License, Version 1.0.
# (See accompanying file LICENSE_1_0.txt or copy at http://boost.org/LICENSE_1_0.txt)
---
name: codecov
on:
pull_request:
push:
branches:
- master
- develop
- bugfix/**
- feature/**
- fix/**
- pr/**
env:
GIT_FETCH_JOBS: 8
NET_RETRY_COUNT: 5
B2_CI_VERSION: 1
B2_VARIANT: release
B2_LINK: shared
LCOV_BRANCH_COVERAGE: 0
CODECOV_NAME: Github Actions
jobs:
posix:
defaults:
run:
shell: bash
strategy:
fail-fast: false
matrix:
include:
- { name: Collect coverage special_fun, coverage: yes,
compiler: gcc-12, cxxstd: '20', os: ubuntu-22.04, install: 'g++-12-multilib', address-model: '64', suite: 'special_fun' }
- { name: Collect coverage distribution_tests, coverage: yes,
compiler: gcc-12, cxxstd: '20', os: ubuntu-22.04, install: 'g++-12-multilib', address-model: '64', suite: 'distribution_tests' }
- { name: Collect coverage mp, coverage: yes,
compiler: gcc-12, cxxstd: '20', os: ubuntu-22.04, install: 'g++-12-multilib', address-model: '64', suite: 'mp' }
- { name: Collect coverage misc, coverage: yes,
compiler: gcc-12, cxxstd: '20', os: ubuntu-22.04, install: 'g++-12-multilib', address-model: '64', suite: 'misc' }
- { name: Collect coverage quadrature, coverage: yes,
compiler: gcc-12, cxxstd: '20', os: ubuntu-22.04, install: 'g++-12-multilib', address-model: '64', suite: 'quadrature' }
- { name: Collect coverage interpolators, coverage: yes,
compiler: gcc-12, cxxstd: '20', os: ubuntu-22.04, install: 'g++-12-multilib', address-model: '64', suite: 'interpolators' }
- { name: Collect coverage autodiff, coverage: yes,
compiler: gcc-12, cxxstd: '20', os: ubuntu-22.04, install: 'g++-12-multilib', address-model: '64', suite: 'autodiff' }
timeout-minutes: 360
runs-on: ${{matrix.os}}
container: ${{matrix.container}}
env: {B2_USE_CCACHE: 1}
steps:
- name: Setup environment
run: |
if [ -f "/etc/debian_version" ]; then
echo "DEBIAN_FRONTEND=noninteractive" >> $GITHUB_ENV
export DEBIAN_FRONTEND=noninteractive
fi
if [ -n "${{matrix.container}}" ] && [ -f "/etc/debian_version" ]; then
apt-get -o Acquire::Retries=$NET_RETRY_COUNT update
apt-get -o Acquire::Retries=$NET_RETRY_COUNT install -y sudo software-properties-common curl
# Need (newer) git, and the older Ubuntu container may require requesting the key manually using port 80
curl -sSL --retry ${NET_RETRY_COUNT:-5} 'http://keyserver.ubuntu.com/pks/lookup?op=get&search=0xE1DD270288B4E6030699E45FA1715D88E1DF1F24' | sudo gpg --dearmor -o /etc/apt/trusted.gpg.d/git-core_ubuntu_ppa.gpg
for i in {1..${NET_RETRY_COUNT:-3}}; do sudo -E add-apt-repository -y ppa:git-core/ppa && break || sleep 10; done
apt-get -o Acquire::Retries=$NET_RETRY_COUNT update
osver=$(lsb_release -sr | cut -f1 -d.)
pkgs="g++ git"
# Ubuntu 22+ has only Python 3 in the repos
if [ -n "$osver" ] && [ "$osver" -ge "22" ]; then
pkgs+=" python-is-python3 libpython3-dev"
else
pkgs+=" python libpython-dev"
fi
apt-get -o Acquire::Retries=$NET_RETRY_COUNT install -y $pkgs
fi
# For jobs not compatible with ccache, use "ccache: no" in the matrix
if [[ "${{ matrix.ccache }}" == "no" ]]; then
echo "B2_USE_CCACHE=0" >> $GITHUB_ENV
fi
git config --global pack.threads 0
- uses: actions/checkout@v4
with:
# For coverage builds fetch the whole history, else only 1 commit using a 'fake ternary'
fetch-depth: ${{ matrix.coverage && '0' || '1' }}
- name: Cache ccache
uses: actions/cache@v4
if: env.B2_USE_CCACHE
with:
path: ~/.ccache
key: ${{matrix.os}}-${{matrix.container}}-${{matrix.compiler}}-${{github.sha}}
restore-keys: ${{matrix.os}}-${{matrix.container}}-${{matrix.compiler}}-
- name: Fetch Boost.CI
uses: actions/checkout@v4
with:
repository: boostorg/boost-ci
ref: master
path: boost-ci-cloned
- name: Get CI scripts folder
run: |
# Copy ci folder if not testing Boost.CI
[[ "$GITHUB_REPOSITORY" =~ "boost-ci" ]] || cp -r boost-ci-cloned/ci .
rm -rf boost-ci-cloned
- name: Install packages
if: startsWith(matrix.os, 'ubuntu')
run: |
SOURCE_KEYS=(${{join(matrix.source_keys, ' ')}})
SOURCES=(${{join(matrix.sources, ' ')}})
# Add this by default
SOURCES+=(ppa:ubuntu-toolchain-r/test)
for key in "${SOURCE_KEYS[@]}"; do
for i in {1..$NET_RETRY_COUNT}; do
keyfilename=$(basename -s .key $key)
curl -sSL --retry ${NET_RETRY_COUNT:-5} "$key" | sudo gpg --dearmor > /etc/apt/trusted.gpg.d/${keyfilename} && break || sleep 10
done
done
for source in "${SOURCES[@]}"; do
for i in {1..$NET_RETRY_COUNT}; do
sudo add-apt-repository $source && break || sleep 10
done
done
sudo apt-get -o Acquire::Retries=$NET_RETRY_COUNT update
if [[ -z "${{matrix.install}}" ]]; then
pkgs="${{matrix.compiler}}"
pkgs="${pkgs/gcc-/g++-}"
else
pkgs="${{matrix.install}}"
fi
sudo apt-get -o Acquire::Retries=$NET_RETRY_COUNT install -y $pkgs
- name: Setup GCC Toolchain
if: matrix.gcc_toolchain
run: |
GCC_TOOLCHAIN_ROOT="$HOME/gcc-toolchain"
echo "GCC_TOOLCHAIN_ROOT=$GCC_TOOLCHAIN_ROOT" >> $GITHUB_ENV
if ! command -v dpkg-architecture; then
apt-get install -y dpkg-dev
fi
MULTIARCH_TRIPLET="$(dpkg-architecture -qDEB_HOST_MULTIARCH)"
mkdir -p "$GCC_TOOLCHAIN_ROOT"
ln -s /usr/include "$GCC_TOOLCHAIN_ROOT/include"
ln -s /usr/bin "$GCC_TOOLCHAIN_ROOT/bin"
mkdir -p "$GCC_TOOLCHAIN_ROOT/lib/gcc/$MULTIARCH_TRIPLET"
ln -s "/usr/lib/gcc/$MULTIARCH_TRIPLET/${{matrix.gcc_toolchain}}" "$GCC_TOOLCHAIN_ROOT/lib/gcc/$MULTIARCH_TRIPLET/${{matrix.gcc_toolchain}}"
- name: Setup multiarch
if: matrix.multiarch
run: |
sudo apt-get install --no-install-recommends -y binfmt-support qemu-user-static
sudo docker run --rm --privileged multiarch/qemu-user-static --reset -p yes
git clone https://github.com/jeking3/bdde.git
echo "$(pwd)/bdde/bin/linux" >> ${GITHUB_PATH}
echo "BDDE_DISTRO=${{ matrix.distro }}" >> ${GITHUB_ENV}
echo "BDDE_EDITION=${{ matrix.edition }}" >> ${GITHUB_ENV}
echo "BDDE_ARCH=${{ matrix.arch }}" >> ${GITHUB_ENV}
echo "B2_WRAPPER=bdde" >> ${GITHUB_ENV}
- name: Setup Boost
env:
B2_ADDRESS_MODEL: ${{matrix.address-model}}
B2_COMPILER: ${{matrix.compiler}}
B2_CXXSTD: ${{matrix.cxxstd}}
B2_SANITIZE: ${{matrix.sanitize}}
B2_STDLIB: ${{matrix.stdlib}}
# More entries can be added in the same way, see the B2_ARGS assignment in ci/enforce.sh for the possible keys.
B2_DEFINES: CI_SUPPRESS_KNOWN_ISSUES=1 SLOW_COMPILER=1 BOOST_MATH_NO_REAL_CONCEPT_TESTS=1
# Variables set here (to non-empty) will override the top-level environment variables, e.g.
# B2_VARIANT: ${{matrix.variant}}
# Set the (B2) target(s) to build, defaults to the test folder of the current library
# Can alternatively be done like this in the build step or in the build command of the build step, e.g. `run: B2_TARGETS=libs/$SELF/doc ci/build.sh`
B2_TARGETS: libs/math/test//${{ matrix.suite }}
run: source ci/github/install.sh
- name: Setup coverage collection
if: matrix.coverage
run: ci/github/codecov.sh "setup"
- name: Run tests
if: '!matrix.coverity'
run: ci/build.sh
- name: Upload coverage
if: matrix.coverage
run: ci/codecov.sh "upload"
env:
BOOST_CI_CODECOV_IO_UPLOAD: skip
- name: Upload coverage
if: matrix.coverage
uses: codecov/codecov-action@v4
with:
disable_search: true
file: coverage.info
name: Github Actions
token: ${{secrets.CODECOV_TOKEN}}
verbose: true