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Update README.md
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bluenote-1577 authored Jan 22, 2024
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Expand Up @@ -53,6 +53,9 @@ floria -h # binary is available in PATH
# run floria on mock data
floria -b tests/test_long.bam -v tests/test.vcf -r tests/MN-03.fa -o 3_klebsiella_strains
ls 3_klebsiella_strains

# visualize strain "vartigs" if you have matplotlib
python scripts/visualize_vartigs.py 3_klebsiella_strains/NZ_CP081897.1/NZ_CP081897.1.vartigs
```

If you're using an **ARM architecture with NEON instructions** (e.g. Mac M1):
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